PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002428
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TCP
Protein Properties Length: 432aa    MW: 46917.3 Da    PI: 6.9235
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002428genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.21.2e-3737139289
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg.......... 88 
                +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++++ ++s     ++ ++++s + ++++          
  Cla002428  37 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPAWHPSTGntsTQREEQQSLNDENENllsvqrevfn 136
                79**************************************************************666663332223333333333333335555544444 PP

        TCP  89 ..k 89 
                   
  Cla002428 137 ttG 139
                441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.6E-3237148IPR005333Transcription factor, TCP
PROSITE profilePS5136934.2953997IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MGESHRQTST SSRLGMRTGG GGGEIVEVQG GHIVRSTGRK DRHSKVCTAK GPRDRRVRLS  60
AHTAIQFYDV QDRLGYDRPS KAVDWLIKKA KAAIDELAEL PAWHPSTGNT STQREEQQSL  120
NDENENLLSV QREVFNTTGN RRATVLGSES RVSEFPLQNL QHTQMGEGPN SSTSSFLPPS  180
LDSDSIADTI KSFFPIGTAA AETTSSSIQF QNYPQDLLSR TSSQNQDLRL SLQSFQDPIA  240
IHRHHHAQHQ SQGHQNEHVL FSGTAPLSGF DVTTAGWSEH NSLNPAEISR FPRITCWNAS  300
GAETGSGGGS SGHGGGGIRS AGYVFNSPQL PTALPPSQLM QPLFGENQFF SQRGPLQSSN  360
TPSIRAWIDP SLTPTDHQHH QMPPSIHQSS YTALGFASGG FSGFHIPTRI QGEEEHDGIS  420
DKPSSASSDS RH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818730.0LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137216.20.0PREDICTED: transcription factor TCP4, partial
SwissprotQ8LPR51e-105TCP4_ARATH; Transcription factor TCP4
TrEMBLA0A0A0KXN10.0A0A0A0KXN1_CUCSA; Uncharacterized protein
STRINGPOPTR_0001s38480.11e-154(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-72TCP family protein